IL_7MQA_032
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAC*GGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_032 not in the Motif Atlas
- Geometric match to IL_3MEI_002
- Geometric discrepancy: 0.2415
- The information below is about IL_3MEI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7MQA|1|L1|G|535
7MQA|1|L1|A|536
7MQA|1|L1|C|537
*
7MQA|1|L1|G|546
7MQA|1|L1|G|547
7MQA|1|L1|C|548
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NB
- Something about silencing protein 10
- Chain SD
- rRNA 2'-O-methyltransferase fibrillarin
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SL
- rRNA-processing protein FCF1 homolog
- Chain SQ
- Deoxynucleotidyltransferase terminal-interacting protein 2
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