IL_7MQA_036
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(PSU)G*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_036 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.0974
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
7MQA|1|L1|C|608
7MQA|1|L1|PSU|609
7MQA|1|L1|G|610
*
7MQA|1|L1|C|615
7MQA|1|L1|A|616
7MQA|1|L1|G|617
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain SR
- 40S ribosomal protein S23
- Chain ST
- Nucleolar protein 14
- Chain SY
- Probable U3 small nucleolar RNA-associated protein 11
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