IL_7MQA_040
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_040 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.1541
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
7MQA|1|L1|C|676
7MQA|1|L1|G|677
7MQA|1|L1|U|678
7MQA|1|L1|A|679
7MQA|1|L1|G|680
*
7MQA|1|L1|U|1025
7MQA|1|L1|C|1026
7MQA|1|L1|A|1027
7MQA|1|L1|A|1028
7MQA|1|L1|G|1029
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LD
- 40S ribosomal protein S11
- Chain NF
- 40S ribosomal protein S13
- Chain NO
- 40S ribosomal protein S15a
- Chain SR
- 40S ribosomal protein S23
Coloring options: