IL_7MQA_069

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

7MQA|1|L1|A|1522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_069 not in the Motif Atlas

Geometric match to IL_8X5V_002

Geometric discrepancy: 0.354

The information below is about IL_8X5V_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7MQA|1|L1|G|1235
7MQA|1|L1|G|1236
*
7MQA|1|L1|C|1521
7MQA|1|L1|A|1522
7MQA|1|L1|C|1523

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SK

Ribosomal RNA small subunit methyltransferase NEP1

Chain ST

Nucleolar protein 14