IL_7MQA_087

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_087 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.2654

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7MQA|1|L1|U|1729
7MQA|1|L1|U|1730
7MQA|1|L1|A|1731
*
7MQA|1|L1|U|1803
7MQA|1|L1|U|1804
7MQA|1|L1|G|1805

Current chains

Chain L1

18S rRNA

Nearby chains