IL_7MQA_105

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGU*AG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_105 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.2657

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7MQA|1|L1|U|152
7MQA|1|L1|G|153
7MQA|1|L1|U|154
*
7MQA|1|L1|A|164
7MQA|1|L1|G|165
7MQA|1|L1|A2M|166

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain LF

40S ribosomal protein S24