IL_7MQA_111

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7MQA|1|L1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_111 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2711

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7MQA|1|L1|G|925
7MQA|1|L1|A|926
*
7MQA|1|L1|U|1015
7MQA|1|L1|U|1016
7MQA|1|L1|U|1017

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NF

40S ribosomal protein S13

Chain NI

Ribosomal RNA-processing protein 7 homolog A

Chain NQ

40S ribosomal protein S27