IL_7MSC_108

3D structure

PDB id

7MSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

7MSC|1|A|G|3114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSC_108 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.225

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7MSC|1|A|G|3073
7MSC|1|A|G|3074
*
7MSC|1|A|U|3113
7MSC|1|A|G|3114
7MSC|1|A|C|3115

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17