IL_7MSH_165

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAUG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSH_165 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2976

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7MSH|1|a|C|1251
7MSH|1|a|G|1252
7MSH|1|a|A|1253
7MSH|1|a|U|1254
7MSH|1|a|G|1255
*
7MSH|1|a|U|1264
7MSH|1|a|U|1265
7MSH|1|a|A|1266
7MSH|1|a|A|1267
7MSH|1|a|G|1268

Current chains

Chain a

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S19