IL_7MT2_072

3D structure

PDB id

7MT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7MT2|1|A|G|2035, 7MT2|1|A|U|2050, 7MT2|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MT2_072 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0924

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7MT2|1|A|U|2032
7MT2|1|A|G|2033
7MT2|1|A|C|2034
7MT2|1|A|G|2035
7MT2|1|A|A|2036
7MT2|1|A|A|2037
7MT2|1|A|G|2038
*
7MT2|1|A|C|2047
7MT2|1|A|G|2048
7MT2|1|A|A|2049
7MT2|1|A|U|2050
7MT2|1|A|G|2051
7MT2|1|A|U|2052
7MT2|1|A|A|2053
7MT2|1|A|U|2054
7MT2|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA