IL_7N1P_010

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_010 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0774

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7N1P|1|16|C|132
7N1P|1|16|U|133
7N1P|1|16|G|134
7N1P|1|16|C|135
7N1P|1|16|C|136
*
7N1P|1|16|G|227
7N1P|1|16|A|228
7N1P|1|16|U|229
7N1P|1|16|G|230

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain ST

30S ribosomal protein S20