IL_7N1P_020

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0579

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7N1P|1|16|U|409
7N1P|1|16|G|410
7N1P|1|16|A|411
7N1P|1|16|A|412
7N1P|1|16|G|413
7N1P|1|16|A|414
7N1P|1|16|A|415
7N1P|1|16|G|416
*
7N1P|1|16|U|427
7N1P|1|16|G|428
7N1P|1|16|U|429
7N1P|1|16|A|430
7N1P|1|16|A|431
7N1P|1|16|A|432
7N1P|1|16|G|433

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4