IL_7N1P_038

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_038 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0561

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7N1P|1|16|C|779
7N1P|1|16|A|780
7N1P|1|16|A|781
7N1P|1|16|A|782
7N1P|1|16|C|783
*
7N1P|1|16|G|799
7N1P|1|16|G|800
7N1P|1|16|U|801
7N1P|1|16|A|802
7N1P|1|16|G|803

Current chains

Chain 16

16S rRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SK

30S ribosomal protein S11

Chain SU

30S ribosomal protein S21