IL_7N2V_158

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_158 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7N2V|1|23|A|2459
7N2V|1|23|U|2460
7N2V|1|23|A|2461
*
7N2V|1|23|U|2489
7N2V|1|23|G|2490
7N2V|1|23|U|2491
7N2V|1|23|U|2492
7N2V|1|23|U|2493

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LP

50S ribosomal protein L16