IL_7N3O_001

3D structure

PDB id

7N3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Cas12k-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUG*CCUCU

Length

8 nucleotides

Bulged bases

7N3O|1|B|U|23

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N3O_001 not in the Motif Atlas

Geometric match to IL_4JRC_003

Geometric discrepancy: 0.2216

The information below is about IL_4JRC_003

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

7N3O|1|B|A|22
7N3O|1|B|U|23
7N3O|1|B|G|24
*
7N3O|1|B|C|35
7N3O|1|B|C|36
7N3O|1|B|U|37
7N3O|1|B|C|38
7N3O|1|B|U|39

Current chains

Chain B

Single guide RNA

Nearby chains

Chain A

Cas12k