IL_7N8B_014

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

7N8B|1|A1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_014 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1253

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7N8B|1|A1|G|337
7N8B|1|A1|A|338
7N8B|1|A1|C|339
*
7N8B|1|A4|G|25
7N8B|1|A4|U|26

Current chains

Chain A1

25S

Chain A4

5.8S

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A