IL_7N8B_028

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_028 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1168

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7N8B|1|A1|C|758
7N8B|1|A1|U|759
7N8B|1|A1|G|760
7N8B|1|A1|A|761
7N8B|1|A1|U|762
7N8B|1|A1|G|763
*
7N8B|1|A1|C|768
7N8B|1|A1|G|769
7N8B|1|A1|G|770
7N8B|1|A1|A|771
7N8B|1|A1|U|772
7N8B|1|A1|G|773

Current chains

Chain A1

25S

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A