IL_7N8B_030

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAA*U(OMU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_030 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1085

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7N8B|1|A1|G|826
7N8B|1|A1|A|827
7N8B|1|A1|A|828
*
7N8B|1|A1|U|897
7N8B|1|A1|OMU|898
7N8B|1|A1|U|899

Current chains

Chain A1

25S

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ag

60S ribosomal protein L34-A

Chain Aj

60S ribosomal protein L37-A