IL_7N8B_038

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

7N8B|1|A1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_038 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.3009

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

7N8B|1|A1|C|977
7N8B|1|A1|G|978
7N8B|1|A1|U|979
7N8B|1|A1|A|980
7N8B|1|A1|U|981
7N8B|1|A1|C|982
*
7N8B|1|A1|G|1101
7N8B|1|A1|A|1102
7N8B|1|A1|A|1103
7N8B|1|A1|G|1104

Current chains

Chain A1

25S

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AQ

60S ribosomal protein L18-A

Chain Ab

60S ribosomal protein L29