IL_7N8B_106

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_106 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2376

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7N8B|1|A1|G|2828
7N8B|1|A1|U|2829
7N8B|1|A1|G|2830
*
7N8B|1|A1|U|2858
7N8B|1|A1|U|2859
7N8B|1|A1|U|2860
7N8B|1|A1|U|2861
7N8B|1|A1|U|2862

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

60S ribosomal protein L10