IL_7N8B_160

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_160 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.1121

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7N8B|1|B5|U|117
7N8B|1|B5|U|118
7N8B|1|B5|A|119
7N8B|1|B5|U|120
7N8B|1|B5|U|121
7N8B|1|B5|U|122
*
7N8B|1|B5|A|295
7N8B|1|B5|U|296
7N8B|1|B5|U|297
7N8B|1|B5|C|298
7N8B|1|B5|A|299

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BI

40S ribosomal protein S8-A