IL_7N8B_205

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7N8B|1|B5|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_205 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.0559

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7N8B|1|B5|G|1146
7N8B|1|B5|A|1147
*
7N8B|1|B5|U|1630
7N8B|1|B5|A|1631
7N8B|1|B5|C|1632

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BC

40S ribosomal protein S2

Chain Ba

40S ribosomal protein S26-B

Chain Bh

Suppressor protein STM1