IL_7N8B_215
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 7N8B|1|B5|A|1427
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N8B_215 not in the Motif Atlas
- Geometric match to IL_5MWI_006
- Geometric discrepancy: 0.1558
- The information below is about IL_5MWI_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
7N8B|1|B5|C|1279
7N8B|1|B5|4AC|1280
7N8B|1|B5|G|1281
*
7N8B|1|B5|C|1426
7N8B|1|B5|A|1427
7N8B|1|B5|OMG|1428
7N8B|1|B5|G|1429
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S2
- Chain BD
- 40S ribosomal protein S3
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bh
- Suppressor protein STM1
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