IL_7N8B_240

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_240 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1069

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7N8B|1|B5|C|1772
7N8B|1|B5|4AC|1773
7N8B|1|B5|G|1774
*
7N8B|1|B5|C|1787
7N8B|1|B5|G|1788
7N8B|1|B5|G|1789

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain BO

40S ribosomal protein S14-A

Chain Ba

40S ribosomal protein S26-B