IL_7N8B_249
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 39 nucleotides
- Bulged bases
- 7N8B|1|A1|A|2535, 7N8B|1|A1|U|2537, 7N8B|1|A1|C|2539, 7N8B|1|A1|A|2540, 7N8B|1|A1|U|2541, 7N8B|1|A1|C|2548, 7N8B|1|A1|G|2549, 7N8B|1|A1|U|2550, 7N8B|1|A1|U|2551, 7N8B|1|A1|C|2552, 7N8B|1|A1|U|2553, 7N8B|1|A1|A|2554, 7N8B|1|A1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7N8B|1|A1|A|2529
7N8B|1|A1|G|2530
7N8B|1|A1|C|2531
7N8B|1|A1|U|2532
7N8B|1|A1|G|2533
7N8B|1|A1|G|2534
7N8B|1|A1|A|2535
7N8B|1|A1|A|2536
7N8B|1|A1|U|2537
7N8B|1|A1|U|2538
7N8B|1|A1|C|2539
7N8B|1|A1|A|2540
7N8B|1|A1|U|2541
7N8B|1|A1|U|2542
7N8B|1|A1|U|2543
7N8B|1|A1|U|2544
7N8B|1|A1|C|2545
7N8B|1|A1|C|2546
7N8B|1|A1|A|2547
7N8B|1|A1|C|2548
7N8B|1|A1|G|2549
7N8B|1|A1|U|2550
7N8B|1|A1|U|2551
7N8B|1|A1|C|2552
7N8B|1|A1|U|2553
7N8B|1|A1|A|2554
7N8B|1|A1|G|2555
7N8B|1|A1|C|2556
7N8B|1|A1|A|2557
7N8B|1|A1|U|2558
7N8B|1|A1|U|2559
7N8B|1|A1|C|2560
7N8B|1|A1|A|2561
7N8B|1|A1|A|2562
7N8B|1|A1|G|2563
*
7N8B|1|A1|U|2578
7N8B|1|A1|G|2579
7N8B|1|A1|A|2580
7N8B|1|A1|U|2581
Current chains
- Chain A1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AX
- 60S ribosomal protein L25
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- 40S ribosomal protein S1-A
Coloring options: