IL_7N8B_252

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_252 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1695

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7N8B|1|A1|A|3016
7N8B|1|A1|A|3017
7N8B|1|A1|C|3018
*
7N8B|1|A1|G|3036
7N8B|1|A1|U|3037
7N8B|1|A1|U|3038

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AH

60S ribosomal protein L9-A

Chain AV

60S ribosomal protein L23-A