IL_7N8B_255

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAGGGCC*GGUCUUG

Length

14 nucleotides

Bulged bases

7N8B|1|B5|A|485, 7N8B|1|B5|G|498, 7N8B|1|B5|C|500, 7N8B|1|B5|U|501

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|C|484
7N8B|1|B5|A|485
7N8B|1|B5|G|486
7N8B|1|B5|G|487
7N8B|1|B5|G|488
7N8B|1|B5|C|489
7N8B|1|B5|C|490
*
7N8B|1|B5|G|497
7N8B|1|B5|G|498
7N8B|1|B5|U|499
7N8B|1|B5|C|500
7N8B|1|B5|U|501
7N8B|1|B5|U|502
7N8B|1|B5|G|503

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A