IL_7NAT_020

3D structure

PDB id

7NAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAT_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1188

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NAT|1|A|U|409
7NAT|1|A|G|410
7NAT|1|A|A|411
7NAT|1|A|A|412
7NAT|1|A|G|413
7NAT|1|A|A|414
7NAT|1|A|A|415
7NAT|1|A|G|416
*
7NAT|1|A|U|427
7NAT|1|A|G|428
7NAT|1|A|U|429
7NAT|1|A|A|430
7NAT|1|A|A|431
7NAT|1|A|A|432
7NAT|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4