IL_7NAU_020

3D structure

PDB id

7NAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAU_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1386

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NAU|1|A|U|409
7NAU|1|A|G|410
7NAU|1|A|A|411
7NAU|1|A|A|412
7NAU|1|A|G|413
7NAU|1|A|A|414
7NAU|1|A|A|415
7NAU|1|A|G|416
*
7NAU|1|A|U|427
7NAU|1|A|G|428
7NAU|1|A|U|429
7NAU|1|A|A|430
7NAU|1|A|A|431
7NAU|1|A|A|432
7NAU|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4