IL_7NAU_065

3D structure

PDB id

7NAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAU_065 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.159

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7NAU|1|A|A|673
7NAU|1|A|G|674
7NAU|1|A|A|675
7NAU|1|A|A|676
7NAU|1|A|U|677
*
7NAU|1|A|G|713
7NAU|1|A|G|714
7NAU|1|A|A|715
7NAU|1|A|A|716
7NAU|1|A|U|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18