3D structure

PDB id
7NAV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NAV_020 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.1626
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

7NAV|1|A|U|409
7NAV|1|A|G|410
7NAV|1|A|A|411
7NAV|1|A|A|412
7NAV|1|A|G|413
7NAV|1|A|A|414
7NAV|1|A|A|415
7NAV|1|A|G|416
*
7NAV|1|A|U|427
7NAV|1|A|G|428
7NAV|1|A|U|429
7NAV|1|A|A|430
7NAV|1|A|A|431
7NAV|1|A|A|432
7NAV|1|A|G|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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