IL_7NAV_025
3D structure
- PDB id
- 7NAV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7NAV|1|A|A|532, 7NAV|1|A|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NAV_025 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.5285
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NAV|1|A|G|515
7NAV|1|A|PSU|516
7NAV|1|A|G|517
7NAV|1|A|C|518
7NAV|1|A|C|519
7NAV|1|A|A|520
7NAV|1|A|G|521
*
7NAV|1|A|C|528
7NAV|1|A|G|529
7NAV|1|A|G|530
7NAV|1|A|U|531
7NAV|1|A|A|532
7NAV|1|A|A|533
7NAV|1|A|U|534
7NAV|1|A|A|535
7NAV|1|A|C|536
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain X
- Ribosome maturation factor RimP
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