IL_7NBU_020

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1041

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NBU|1|A|U|409
7NBU|1|A|G|410
7NBU|1|A|A|411
7NBU|1|A|A|412
7NBU|1|A|G|413
7NBU|1|A|A|414
7NBU|1|A|A|415
7NBU|1|A|G|416
*
7NBU|1|A|U|427
7NBU|1|A|G|428
7NBU|1|A|U|429
7NBU|1|A|A|430
7NBU|1|A|A|431
7NBU|1|A|A|432
7NBU|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4