3D structure

PDB id
7NBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NBU_025 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.088
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

7NBU|1|A|C|504
7NBU|1|A|G|505
7NBU|1|A|G|506
7NBU|1|A|C|507
7NBU|1|A|U|508
7NBU|1|A|A|509
7NBU|1|A|A|510
7NBU|1|A|C|511
*
7NBU|1|A|G|540
7NBU|1|A|G|541

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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