IL_7NBU_065

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_065 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7NBU|1|A|G|1416
7NBU|1|A|G|1417
7NBU|1|A|A|1418
7NBU|1|A|G|1419
*
7NBU|1|A|U|1481
7NBU|1|A|G|1482
7NBU|1|A|A|1483
7NBU|1|A|C|1484

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA