IL_7NBU_072

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

7NBU|1|a|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_072 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.2688

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7NBU|1|a|G|81
7NBU|1|a|U|82
7NBU|1|a|A|83
7NBU|1|a|A|84
7NBU|1|a|G|85
*
7NBU|1|a|C|97
7NBU|1|a|G|98
7NBU|1|a|U|99
7NBU|1|a|U|100
7NBU|1|a|A|101
7NBU|1|a|U|102
7NBU|1|a|A|103
7NBU|1|a|A|104
7NBU|1|a|C|105

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24

Chain x

50S ribosomal protein L29