3D structure

PDB id
7NBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NBU_097 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.2636
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7NBU|1|a|G|875
7NBU|1|a|C|876
7NBU|1|a|A|877
7NBU|1|a|A|878
7NBU|1|a|G|879
*
7NBU|1|a|C|898
7NBU|1|a|A|899
7NBU|1|a|A|900
7NBU|1|a|C|901
7NBU|1|a|C|902

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L16

Coloring options:


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