IL_7NBU_128

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

7NBU|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_128 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0825

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7NBU|1|a|A|1669
7NBU|1|a|C|1670
7NBU|1|a|U|1671
7NBU|1|a|A|1672
7NBU|1|a|G|1673
7NBU|1|a|G|1674
*
7NBU|1|a|C|1990
7NBU|1|a|U|1991
7NBU|1|a|G|1992
7NBU|1|a|U|1993

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14