IL_7NBU_129

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7NBU|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_129 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0984

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7NBU|1|a|C|1686
7NBU|1|a|G|1687
7NBU|1|a|U|1688
7NBU|1|a|A|1689
7NBU|1|a|A|1690
7NBU|1|a|C|1691
*
7NBU|1|a|G|1696
7NBU|1|a|G|1697
7NBU|1|a|A|1698
7NBU|1|a|G|1699
7NBU|1|a|A|1700
7NBU|1|a|A|1701
7NBU|1|a|G|1702

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2