IL_7NBU_185

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUGAGCCUUGAUGUGUAGGAUAGGUGGGAGG*CGACCUUGAAAUACCACCCUUUAAUGUUUGA

Length

62 nucleotides

Bulged bases

7NBU|1|a|C|2104, 7NBU|1|a|U|2106, 7NBU|1|a|G|2112, 7NBU|1|a|G|2116, 7NBU|1|a|G|2125, 7NBU|1|a|A|2126, 7NBU|1|a|U|2167, 7NBU|1|a|C|2174, 7NBU|1|a|C|2177, 7NBU|1|a|U|2180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NBU|1|a|U|2098
7NBU|1|a|U|2099
7NBU|1|a|G|2100
7NBU|1|a|A|2101
7NBU|1|a|G|2102
7NBU|1|a|C|2103
7NBU|1|a|C|2104
7NBU|1|a|U|2105
7NBU|1|a|U|2106
7NBU|1|a|G|2107
7NBU|1|a|A|2108
7NBU|1|a|U|2109
7NBU|1|a|G|2110
7NBU|1|a|U|2111
7NBU|1|a|G|2112
7NBU|1|a|U|2113
7NBU|1|a|A|2114
7NBU|1|a|G|2115
7NBU|1|a|G|2116
7NBU|1|a|A|2117
7NBU|1|a|U|2118
7NBU|1|a|A|2119
7NBU|1|a|G|2120
7NBU|1|a|G|2121
7NBU|1|a|U|2122
7NBU|1|a|G|2123
7NBU|1|a|G|2124
7NBU|1|a|G|2125
7NBU|1|a|A|2126
7NBU|1|a|G|2127
7NBU|1|a|G|2128
*
7NBU|1|a|C|2161
7NBU|1|a|G|2162
7NBU|1|a|A|2163
7NBU|1|a|C|2164
7NBU|1|a|C|2165
7NBU|1|a|U|2166
7NBU|1|a|U|2167
7NBU|1|a|G|2168
7NBU|1|a|A|2169
7NBU|1|a|A|2170
7NBU|1|a|A|2171
7NBU|1|a|U|2172
7NBU|1|a|A|2173
7NBU|1|a|C|2174
7NBU|1|a|C|2175
7NBU|1|a|A|2176
7NBU|1|a|C|2177
7NBU|1|a|C|2178
7NBU|1|a|C|2179
7NBU|1|a|U|2180
7NBU|1|a|U|2181
7NBU|1|a|U|2182
7NBU|1|a|A|2183
7NBU|1|a|A|2184
7NBU|1|a|U|2185
7NBU|1|a|G|2186
7NBU|1|a|U|2187
7NBU|1|a|U|2188
7NBU|1|a|U|2189
7NBU|1|a|G|2190
7NBU|1|a|A|2191

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9