IL_7NFX_015

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_015 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.3947

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7NFX|1|1|G|188
7NFX|1|1|C|189
7NFX|1|1|C|190
*
7NFX|1|1|G|210
7NFX|1|1|U|211
7NFX|1|1|C|212

Current chains

Chain 1

SRP RNA 7SL

Nearby chains

Chain x

Signal recognition particle 54 kDa protein

Chain y

Signal recognition particle receptor subunit alpha