IL_7NFX_023

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7NFX|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_023 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2087

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

7NFX|1|5|C|118
7NFX|1|5|G|119
7NFX|1|5|A|120
7NFX|1|5|A|121
*
7NFX|1|5|U|152
7NFX|1|5|G|153

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain h

uL29