IL_7NHK_024

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_024 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0843

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

7NHK|1|A|U|742
7NHK|1|A|G|743
7NHK|1|A|A|744
7NHK|1|A|A|745
7NHK|1|A|G|746
*
7NHK|1|A|U|763
7NHK|1|A|G|764
7NHK|1|A|G|765
7NHK|1|A|A|766
7NHK|1|A|G|767

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2