IL_7NHK_042
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 7NHK|1|A|A|1166, 7NHK|1|A|U|1169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHK_042 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1086
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
7NHK|1|A|G|1063
7NHK|1|A|G|1064
7NHK|1|A|A|1065
7NHK|1|A|A|1066
7NHK|1|A|A|1067
7NHK|1|A|A|1068
7NHK|1|A|G|1069
*
7NHK|1|A|C|1163
7NHK|1|A|G|1164
7NHK|1|A|A|1165
7NHK|1|A|A|1166
7NHK|1|A|A|1167
7NHK|1|A|A|1168
7NHK|1|A|U|1169
7NHK|1|A|G|1170
7NHK|1|A|U|1171
7NHK|1|A|A|1172
7NHK|1|A|C|1173
7NHK|1|A|C|1174
7NHK|1|A|G|1175
7NHK|1|A|G|1176
7NHK|1|A|G|1177
7NHK|1|A|G|1178
7NHK|1|A|C|1179
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain P
- 50S ribosomal protein L16
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