IL_7NHK_070

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAAA*UGAAGUAUA

Length

16 nucleotides

Bulged bases

7NHK|1|A|A|1814, 7NHK|1|A|A|1829, 7NHK|1|A|U|1833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.123

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NHK|1|A|U|1811
7NHK|1|A|G|1812
7NHK|1|A|C|1813
7NHK|1|A|A|1814
7NHK|1|A|A|1815
7NHK|1|A|A|1816
7NHK|1|A|A|1817
*
7NHK|1|A|U|1826
7NHK|1|A|G|1827
7NHK|1|A|A|1828
7NHK|1|A|A|1829
7NHK|1|A|G|1830
7NHK|1|A|U|1831
7NHK|1|A|A|1832
7NHK|1|A|U|1833
7NHK|1|A|A|1834

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA