IL_7NHK_092

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_092 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0937

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7NHK|1|A|C|2363
7NHK|1|A|G|2364
7NHK|1|A|A|2365
7NHK|1|A|G|2366
*
7NHK|1|A|C|2377
7NHK|1|A|G|2378
7NHK|1|A|A|2379
7NHK|1|A|G|2380

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain Y

50S ribosomal protein L27