IL_7NHK_093

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

7NHK|1|A|U|2415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_093 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3598

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7NHK|1|A|U|2414
7NHK|1|A|U|2415
7NHK|1|A|C|2416
*
7NHK|1|A|G|2427
7NHK|1|A|G|2428

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain O

50S ribosomal protein L15