IL_7NHK_099

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7NHK|1|A|G|2589, 7NHK|1|A|A|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_099 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1469

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7NHK|1|A|C|2523
7NHK|1|A|U|2524
7NHK|1|A|C|2525
*
7NHK|1|A|G|2587
7NHK|1|A|C|2588
7NHK|1|A|G|2589
7NHK|1|A|A|2590
7NHK|1|A|G|2591

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain H

50S ribosomal protein L3