IL_7NHK_102

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7NHK|1|A|A|2615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_102 not in the Motif Atlas

Homologous match to IL_4WF9_098

Geometric discrepancy: 0.3115

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

7NHK|1|A|C|2604
7NHK|1|A|G|2605
*
7NHK|1|A|C|2614
7NHK|1|A|A|2615
7NHK|1|A|G|2616

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ABC-F type ribosomal protection protein Lsa(A)

Chain G

50S ribosomal protein L2