IL_7NHK_125

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_125 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1359

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

7NHK|1|a|C|149
7NHK|1|a|U|150
7NHK|1|a|A|151
7NHK|1|a|C|152
7NHK|1|a|C|153
*
7NHK|1|a|G|253
7NHK|1|a|A|254
7NHK|1|a|U|255
7NHK|1|a|G|256

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20